rs29433438 SNP Detail

Summary

• ID
  rs29433438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT ACTTTGCCAC AGACCCCGAG
  R
  GTCAGATAAA AGCCACCGAG CTCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38786453	mCV23860867	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132181272	ENSMUSSNP4381445	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss323685761	CHEV_11_57643901	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29433438					SNP	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721225 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	657 bp distal
Cpgi2912	CpG island 2912	836 bp proximal
Gm32915	predicted gene, 32915	1709 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447812	regulatory region 447812	1882 bp distal
Rr447813	regulatory region 447813	915 bp distal
Rr447814	regulatory region 447814	within coordinates
Rr447815	regulatory region 447815	1738 bp proximal
Tssr3506	transcription start site region 3506	1128 bp upstream
Tssr101646	transcription start site region 101646	1287 bp upstream
Tssr101647	transcription start site region 101647	1295 bp upstream
Tssr101648	transcription start site region 101648	1308 bp upstream
Tssr108123	transcription start site region 108123	1436 bp upstream
Tssr108124	transcription start site region 108124	1379 bp upstream
Tssr108125	transcription start site region 108125	1334 bp upstream
Tssr108126	transcription start site region 108126	1153 bp upstream
Tssr108127	transcription start site region 108127	1086 bp upstream
Tssr108128	transcription start site region 108128	1074 bp upstream
Tssr108129	transcription start site region 108129	939 bp upstream
Tssr108130	transcription start site region 108130	1364 bp downstream
Tssr108131	transcription start site region 108131	1605 bp downstream
Tssr108132	transcription start site region 108132	1685 bp downstream
Tssr108133	transcription start site region 108133	1743 bp downstream