rs29433659 SNP Detail

Summary

• ID
  rs29433659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102837453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCGGGA TGAGCACCAC
  CAGCACGAGC AGCATCACCA CGCCCGCGGC GGCAGCCAGC AGGGTCTTCC GGCCGGCGCG
  GAGCCTTGGG AGAGCCGGGC CACCCGGCCG CGCCGTCGGG GCAATGATGC CGGCGGGTAA
  GGGGCGCGGG CGCGACGCCC GCGCTCAAGG GCGGTCCGGC GGGGCTGCGG GCATGGGGCC
  R
  GGGCCCGGGC GCCGCGCTGC GCTGCTTGCG CTGCGGAGCC CAGCAGCCGG CTCCGGCCTC
  GTGCTTCCCT CCCGCTGCGC TGCCCGACTG AACGCGGCCT CCCGCCTAGC GCCTAGCTCC
  TCCCGCCTTC CCTGGCTGGG GCCACTGCCT CCTCCGTTGG GCCCCGCCCA CCCGCTCCGC
  GGGGCTCGGA GAGGGCGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss38789422	mCV22882363	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29433659					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102837453 () rs orientation: forward

Symbol	Name	Function Class
C1ql1	complement component 1, q subcomponent-like 1	within coordinates
Cpgi3944	CpG island 3944	within coordinates
Cpgi3945	CpG island 3945	1669 bp proximal
Rr457458	regulatory region 457458	51 bp proximal
Rr457459	regulatory region 457459	503 bp proximal
Rr457460	regulatory region 457460	1170 bp proximal
Tssr111125	transcription start site region 111125	571 bp upstream
Tssr111126	transcription start site region 111126	59 bp upstream
Tssr111127	transcription start site region 111127	74 bp downstream
Tssr111128	transcription start site region 111128	114 bp downstream
Tssr111129	transcription start site region 111129	142 bp downstream