rs29434283 SNP Detail

Summary

• ID
  rs29434283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94967577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCACGTT GGTTCGGTGG
  ACGGGTCACC GTTCCGAGCT CCGAGCACCC CACACCCTAG ATGGTCCCGG CCGCGCCCCC
  TTGGAGGTGT TAGCTCTTTG GACCTCGGCT AGGTGGAGGA TTTAGAACGG CAAGCCCTCG
  ATCACCAGGA GGGCAGGAGG GAGGGATCCT CCCCAGCGCG CCCCGCCTCC CCACCGCCCA
  R
  CCCCGCACCT CCCCACCTTG CGCGCCCAGT CCGGGCTCCG CTTTCCTTCC GGGGAAAGAG
  AAAAGGTCCC CGCTCGGCCG CCGCCTCTTA AAGGGGCAGC GCCGCCCCTC CCTCTCCATC
  TCTCCTATCG CGACTCCGCC CTCTCTCTCA GACACCTGTC GGGAACCCTT AAAGCCCGGA
  TTTCCCCTTC CAGCGGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38789259	mCV24742028	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss132653044	ENSMUSSNP3175592	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29434283					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94967577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	within coordinates
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	within coordinates
Tssr3652	transcription start site region 3652	135 bp upstream
Tssr104346	transcription start site region 104346	194 bp upstream
Tssr110254	transcription start site region 110254	162 bp upstream
Tssr110255	transcription start site region 110255	96 bp upstream
Tssr110256	transcription start site region 110256	29 bp upstream
Tssr110257	transcription start site region 110257	52 bp downstream