rs29434333 SNP Detail

Summary

• ID
  rs29434333
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74815252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGAGCCT TCATGTGGTT
  GCTGGGAATT TTAGGACCTT TGGATCAACT CTGCTTGCTC TGGTAGGACC AGCTCTCTCT
  AGTCAACTCC TCTCACTCCA GACGCACCAG AAGAGGGCGC CAGATCTCAT TACAGATGGT
  TGTGAGCCAC GTGGTTTCTG GAATTTGAAC TCAGGACCTT TGGTCCTGAG CAGGTCAGTG
  Y
  TCTTACCCGC TGAGTCATCT TGCCAGCCCC AGCAAAGCAG TTTTTATATT TCCTATTCCT
  CTCAAATCTT TTGACAAAAA CTGCCATTTG TTCTGGCCAC TCTAATTAAT TATACCCATT
  CATTTGAGCT GTTGACTATT TCTCAGTCAT TGTCTTTCTC TCTCTCTCTC TCTCTCTTTT
  TTGGTTTTTC GAGACAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss38791863	mCV23565605	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss132436926	ENSMUSSNP6208874	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29434333					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74815252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	977 bp proximal
Gm72316	predicted gene, 72316	1673 bp upstream
Rr451006	regulatory region 451006	821 bp distal
Rr451007	regulatory region 451007	619 bp distal
Rr451008	regulatory region 451008	within coordinates
Rr451009	regulatory region 451009	77 bp distal
Rr451010	regulatory region 451010	482 bp proximal
Rr451011	regulatory region 451011	1337 bp proximal
Rr451012	regulatory region 451012	1512 bp proximal
Rr451013	regulatory region 451013	1582 bp proximal
Rr451014	regulatory region 451014	1684 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	1413 bp upstream
Srr	serine racemase	within coordinates
Tssr102917	transcription start site region 102917	1390 bp upstream
Tssr102918	transcription start site region 102918	1411 bp upstream
Tssr102919	transcription start site region 102919	1452 bp upstream
Tssr102920	transcription start site region 102920	1655 bp upstream
Tssr109155	transcription start site region 109155	1232 bp downstream
Tssr109156	transcription start site region 109156	1499 bp downstream