rs29434729 SNP Detail

Summary

• ID
  rs29434729
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101676537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTTGGGTC TAAGGACCCC TGAGCTCCTT CCGCTGGCGT
  TAGCTCACGC CTCTGTGCAT CTATACTTAC GTGGGAGTGT GAACACGTCT GTGTGCCCTG
  R
  GGGGAGGGGG AGGCAAACGG ACTTGTGCGC CCAGAGGAAC CATAATAACT AGCATTTATG
  AAGCGCTCTG CCTCCACGTG CTAATTTCCT TCCCATAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38789884	mCV24798820	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss132730300	ENSMUSSNP2201513	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29434729					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101676537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3886	CpG island 3886	within coordinates
Etv4	ets variant 4	340 bp upstream
Gm39392	predicted gene, 39392	1378 bp upstream
Gm71843	predicted gene, 71843	38 bp downstream
Rr386582	regulatory region 386582	209 bp upstream
Rr402993	regulatory region 402993	137 bp downstream
Rr457076	regulatory region 457076	1887 bp distal
Rr457077	regulatory region 457077	733 bp distal
Rr457078	regulatory region 457078	within coordinates
Rr457079	regulatory region 457079	1036 bp proximal
Tssr110962	transcription start site region 110962	1393 bp upstream
Tssr110963	transcription start site region 110963	1361 bp upstream
Tssr110964	transcription start site region 110964	1270 bp upstream
Tssr110965	transcription start site region 110965	1230 bp upstream
Tssr110966	transcription start site region 110966	1144 bp upstream
Tssr110967	transcription start site region 110967	1074 bp upstream
Tssr110968	transcription start site region 110968	1036 bp upstream
Tssr110969	transcription start site region 110969	878 bp upstream
Tssr110970	transcription start site region 110970	855 bp upstream
Tssr110971	transcription start site region 110971	529 bp upstream
Tssr110972	transcription start site region 110972	491 bp upstream
Tssr110973	transcription start site region 110973	470 bp upstream
Tssr110974	transcription start site region 110974	422 bp upstream