rs29434898 SNP Detail

Summary

• ID
  rs29434898
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62023377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGTGGGT CACAGGAAGA GCCACACTTC TGTGAATCAA
  ATGGGCACAT AGTCAGTGCT TTGCTTCTTG TGAAGGAAAA AAATCTAGCC AACTGTTCTC
  M
  TATGTTTAAA GAAGGGGCAC CTGATAGACT TTAGTATTCA TCAGCATAGG GAGAACACAC
  TCATAAATAA TAACTTGCCA AAGTCTCTAC ATCAGAAAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38787549	mCV23331916	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	C
ss132281312	ENSMUSSNP320532	ENSEMBL	ENSEMBL_Sanger	f	SNP					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29434898					SNP	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62023377 () rs orientation: forward

Symbol	Name	Function Class
Gm39985	predicted gene, 39985	162 bp upstream
Rr448793	regulatory region 448793	1982 bp distal
Specc1	sperm antigen with calponin homology and coiled-coil domains 1	within coordinates
Tssr101998	transcription start site region 101998	1463 bp downstream