rs29435253 SNP Detail

Summary

• ID
  rs29435253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:86998543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT TCTGTTTTAT ATTTAAATAT
  R
  CATCCTTATC TGAAAAAATA AAATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38786951	mCV24278727	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A	G
ss132510968	ENSMUSSNP5762498	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29435253					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:86998543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3483	CpG island 3483	998 bp proximal
Gm73625	predicted gene, 73625	1795 bp upstream
Prr11	proline rich 11	Intron
Rr369312	regulatory region 369312	922 bp upstream
Rr453746	regulatory region 453746	378 bp proximal
Rr453747	regulatory region 453747	981 bp proximal
Rr453748	regulatory region 453748	1806 bp proximal
Ska2	spindle and kinetochore associated complex subunit 2	1544 bp upstream
Tssr103905	transcription start site region 103905	1464 bp upstream
Tssr103906	transcription start site region 103906	1504 bp upstream
Tssr103907	transcription start site region 103907	1535 bp upstream
Tssr103908	transcription start site region 103908	1843 bp upstream
Tssr109946	transcription start site region 109946	939 bp downstream
Tssr109947	transcription start site region 109947	1019 bp downstream
Tssr109948	transcription start site region 109948	1049 bp downstream