rs29435513 SNP Detail

Summary

• ID
  rs29435513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69300547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCCCTGTC CCACTCTCAC CGCCTACTCC CTTAAAGAAC
  ACAGAACCCG TTTCACTTCC TCCTTCACGC CACCCCCCTC CCCTTTACTC CTTTCCCGTC
  R
  AAGCTGAACC CACAACAGGC ACAGTACTCC CCTTTCCTAG TCACGTTCCC TTTAATCCTA
  GCTTTGCCTT CTCAAATCTT AGAGCCCAGA AGCTGCTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38788566	mCV22780434	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss132355581	ENSMUSSNP2267641	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss323729421	CHEV_11_69223223	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29435513					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69300547 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	1597 bp upstream
Gm72933	predicted gene, 72933	33 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	153 bp upstream
Rr402670	regulatory region 402670	825 bp downstream
Rr402671	regulatory region 402671	61 bp downstream
Tssr3543	transcription start site region 3543	997 bp upstream
Tssr102456	transcription start site region 102456	777 bp downstream
Tssr102457	transcription start site region 102457	417 bp downstream
Tssr102458	transcription start site region 102458	32 bp downstream
Tssr102459	transcription start site region 102459	1 bp downstream
Tssr102460	transcription start site region 102460	6 bp upstream
Tssr102461	transcription start site region 102461	49 bp upstream
Tssr102462	transcription start site region 102462	77 bp upstream
Tssr102463	transcription start site region 102463	830 bp upstream
Tssr102464	transcription start site region 102464	1104 bp upstream
Tssr102465	transcription start site region 102465	1223 bp upstream
Tssr102466	transcription start site region 102466	1380 bp upstream
Tssr102467	transcription start site region 102467	1598 bp upstream
Tssr102468	transcription start site region 102468	1634 bp upstream
Tssr102469	transcription start site region 102469	1676 bp upstream
Tssr108664	transcription start site region 108664	1890 bp upstream
Tssr108665	transcription start site region 108665	1159 bp upstream
Tssr108666	transcription start site region 108666	561 bp upstream
Tssr108667	transcription start site region 108667	310 bp upstream
Tssr108668	transcription start site region 108668	299 bp upstream
Tssr108669	transcription start site region 108669	276 bp upstream
Tssr108670	transcription start site region 108670	152 bp upstream
Tssr108671	transcription start site region 108671	163 bp downstream
Tssr108672	transcription start site region 108672	647 bp downstream
Tssr108673	transcription start site region 108673	675 bp downstream
Tssr108674	transcription start site region 108674	719 bp downstream
Tssr108675	transcription start site region 108675	886 bp downstream
Tssr108676	transcription start site region 108676	931 bp downstream
Tssr108677	transcription start site region 108677	975 bp downstream
Tssr108678	transcription start site region 108678	991 bp downstream
Tssr108679	transcription start site region 108679	1290 bp downstream
Tssr108680	transcription start site region 108680	1944 bp downstream
Tssr108681	transcription start site region 108681	1975 bp downstream