rs29435555 SNP Detail

Summary

• ID
  rs29435555
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29452165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAAAGCCT ATACTCAACA AAACTGGAAA ACCTGGATGA
  AATGGACAAT TTTCTAGACA GATACCAGGT ACCAGAGTTA AATCAGGATC AGATTAACAA
  W
  CTAAAAAATG TAATCTGAAG CTAATGAAAA ATTCTGATTT GAAAATAAAA GAAAATCTTA
  GTTCTGAAAA ATAACACAAC TTTACACAAT CCTTCTATG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38791330	mCV25280118	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A	T
ss323610820	CHEV_11_29402165	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29435555					SNP	A	A	T	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29452165 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	1636 bp proximal
Tssr100714	transcription start site region 100714	1812 bp upstream