rs29435940 SNP Detail

Summary

• ID
  rs29435940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:115054802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAA GTGCGGGTTG GGCTTGGTGT
  R
  GGACTAGGAT TCTAGAGAGA CTCGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38792189	mCV22627792	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss132871974	ENSMUSSNP6358014	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29435940					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115054802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	within coordinates
Cpgi4110	CpG island 4110	758 bp proximal
Gm72084	predicted gene, 72084	within coordinates
Nherf1	NHERF family PDZ scaffold protein 1	Intron
Rab37	RAB37, member RAS oncogene family	1740 bp downstream
Rr369433	regulatory region 369433	946 bp downstream
Rr403111	regulatory region 403111	613 bp downstream
Rr459783	regulatory region 459783	625 bp distal
Rr459784	regulatory region 459784	336 bp proximal
Rr459785	regulatory region 459785	593 bp proximal
Tssr3727	transcription start site region 3727	605 bp downstream
Tssr105840	transcription start site region 105840	628 bp downstream
Tssr105841	transcription start site region 105841	593 bp downstream
Tssr105842	transcription start site region 105842	563 bp downstream
Tssr105843	transcription start site region 105843	557 bp downstream
Tssr105844	transcription start site region 105844	527 bp downstream
Tssr111730	transcription start site region 111730	841 bp upstream