rs29436244 SNP Detail

Summary

• ID
  rs29436244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94843906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCT CTGAATTTCC TTCCTGGGAC
  K
  TGGGGAGGTG GGGATCCAGG GACAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38792383	mCV22890853	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss323817100	CHEV_11_94814394	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29436244					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94843906 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	38 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	238 bp proximal
Gm74287	predicted gene, 74287	1171 bp downstream
Tssr3647	transcription start site region 3647	1096 bp downstream
Tssr104277	transcription start site region 104277	1930 bp downstream
Tssr104278	transcription start site region 104278	1909 bp downstream
Tssr104279	transcription start site region 104279	1852 bp downstream
Tssr104280	transcription start site region 104280	1840 bp downstream
Tssr104281	transcription start site region 104281	1826 bp downstream
Tssr104282	transcription start site region 104282	1756 bp downstream
Tssr104283	transcription start site region 104283	1603 bp downstream
Tssr104284	transcription start site region 104284	1543 bp downstream
Tssr104285	transcription start site region 104285	1513 bp downstream
Tssr104286	transcription start site region 104286	1480 bp downstream
Tssr104287	transcription start site region 104287	1456 bp downstream
Tssr104288	transcription start site region 104288	1416 bp downstream
Tssr104289	transcription start site region 104289	1408 bp downstream
Tssr104290	transcription start site region 104290	1360 bp downstream
Tssr104291	transcription start site region 104291	1345 bp downstream
Tssr104292	transcription start site region 104292	1248 bp downstream
Tssr104293	transcription start site region 104293	1141 bp downstream
Tssr104294	transcription start site region 104294	1107 bp downstream
Tssr104295	transcription start site region 104295	1063 bp downstream
Tssr104296	transcription start site region 104296	1039 bp downstream
Tssr104297	transcription start site region 104297	1016 bp downstream
Tssr104298	transcription start site region 104298	982 bp downstream
Tssr104299	transcription start site region 104299	948 bp downstream
Tssr104300	transcription start site region 104300	928 bp downstream
Tssr104301	transcription start site region 104301	808 bp downstream
Tssr104302	transcription start site region 104302	794 bp downstream
Tssr104303	transcription start site region 104303	775 bp downstream
Tssr104304	transcription start site region 104304	733 bp downstream
Tssr104305	transcription start site region 104305	711 bp downstream
Tssr104306	transcription start site region 104306	696 bp downstream
Tssr104307	transcription start site region 104307	679 bp downstream
Tssr104308	transcription start site region 104308	606 bp downstream
Tssr104309	transcription start site region 104309	582 bp downstream
Tssr104310	transcription start site region 104310	496 bp downstream
Tssr104311	transcription start site region 104311	447 bp downstream
Tssr104312	transcription start site region 104312	378 bp downstream
Tssr104313	transcription start site region 104313	362 bp downstream
Tssr104314	transcription start site region 104314	39 bp upstream
Tssr110223	transcription start site region 110223	1823 bp upstream
Tssr110224	transcription start site region 110224	1759 bp upstream
Tssr110225	transcription start site region 110225	1543 bp upstream
Tssr110226	transcription start site region 110226	1503 bp upstream
Tssr110227	transcription start site region 110227	1490 bp upstream
Tssr110228	transcription start site region 110228	1430 bp upstream
Tssr110229	transcription start site region 110229	1410 bp upstream
Tssr110230	transcription start site region 110230	1373 bp upstream