rs29436439 SNP Detail

Summary

• ID
  rs29436439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69910190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGGC AAAAAAGCTC ATTTTGAGAT
  R
  CTGACCAATT TTTGGGGGGT CTCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38791594	mCV22952517	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss132364007	ENSMUSSNP421527	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		G
ss323732613	CHEV_11_69832866	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29436439					SNP	A	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69910190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	1891 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1431 bp upstream
Rr402686	regulatory region 402686	1797 bp upstream
Tssr102630	transcription start site region 102630	1272 bp downstream
Tssr102631	transcription start site region 102631	965 bp downstream
Tssr102632	transcription start site region 102632	880 bp downstream
Tssr102633	transcription start site region 102633	517 bp downstream