rs29436735 SNP Detail

Summary

• ID
  rs29436735
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC ACTTTTCCCT CCAGTGGTCT
  W
  CTGTTTCTCC AATTAGTACA TTAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38793751	mCV23860854	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss132181288	ENSMUSSNP4192469	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss323685765	CHEV_11_57644203	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29436735					SNP	T	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	959 bp distal
Cpgi2912	CpG island 2912	534 bp proximal
Cpgi2913	CpG island 2913	1981 bp proximal
Gm32915	predicted gene, 32915	1407 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447813	regulatory region 447813	1217 bp distal
Rr447814	regulatory region 447814	within coordinates
Rr447815	regulatory region 447815	1436 bp proximal
Tssr3506	transcription start site region 3506	1430 bp upstream
Tssr101646	transcription start site region 101646	985 bp upstream
Tssr101647	transcription start site region 101647	993 bp upstream
Tssr101648	transcription start site region 101648	1006 bp upstream
Tssr108123	transcription start site region 108123	1738 bp upstream
Tssr108124	transcription start site region 108124	1681 bp upstream
Tssr108125	transcription start site region 108125	1636 bp upstream
Tssr108126	transcription start site region 108126	1455 bp upstream
Tssr108127	transcription start site region 108127	1388 bp upstream
Tssr108128	transcription start site region 108128	1376 bp upstream
Tssr108129	transcription start site region 108129	1241 bp upstream
Tssr108130	transcription start site region 108130	1062 bp downstream
Tssr108131	transcription start site region 108131	1303 bp downstream
Tssr108132	transcription start site region 108132	1383 bp downstream
Tssr108133	transcription start site region 108133	1441 bp downstream
Tssr108134	transcription start site region 108134	1978 bp downstream