rs29436962 SNP Detail

Summary

• ID
  rs29436962
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69912418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCGGGGCAA TGTATCCAAT AGCTTCATTC ATTGGTCGGC
  AGGGGCGTGG CAGAAGGATA GTGTGGGCGA GGCCGGGGGA GCAAATGGGC GGGAAGCGGA
  K
  GGAGGCGTGG TTTCATGGAG CAAGTGGGCG GAGTCGGCTT ACTCTATCGG AGGAGGCGGG
  CAACAACCCT CAGAAAGGGG AGGGCCTAGG TTGACAGAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38796442	mCV22952714	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss132364027	ENSMUSSNP1214700	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		T
ss323732619	CHEV_11_69835094	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29436962					SNP	G	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69912418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	within coordinates
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	497 bp downstream
Rr402686	regulatory region 402686	130 bp downstream
Rr450198	regulatory region 450198	605 bp distal
Rr450199	regulatory region 450199	170 bp distal
Rr450200	regulatory region 450200	431 bp proximal
Rr450201	regulatory region 450201	1933 bp proximal