rs29437096 SNP Detail

Summary

• ID
  rs29437096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94843571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGAAGCTG AGATGCTCCC
  TAGACCAGCA AATGTTTCTT TTGTTCAAAG TATTTTTTAT TCTTTTTTTT TTTTTTTTTA
  ATGGATAGGG ACTTGTGTGA ATTGTTGGGG TTTTTTTTTT TTTTTTTTTT GGTTTTGTTT
  TTTTTTGTTT TGTTTTGTTT TTTTTCCTGA AGGTGCTATT TAACAAGGGA GAAGAGAGTG
  Y
  GGGGACTTCA CCCTGCCCAC TCTCTACTCT CTCTCCACTC TTCTAGTTCC TGGGCCTATC
  TGATCTCTCT CTTTCTTCTG AAACCCTCCC CTCTTGCTGC TGCTCCCTCC CCTCTGCCTC
  TCTCTTGGTC TGTCCTGCAT CAGGGTTTCA GAGCACCACT TTCCAAAGCA CAAAACAGTT
  TTTACCCCTG GGCTGGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss38797422	mCV22890854	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss323817099	CHEV_11_94814059	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29437096					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94843571 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
D11Lis1	DNA segment, Chr 11, Lisse 1	573 bp proximal
Gm74287	predicted gene, 74287	1506 bp downstream
Tssr3647	transcription start site region 3647	761 bp downstream
Tssr104273	transcription start site region 104273	1907 bp downstream
Tssr104274	transcription start site region 104274	1889 bp downstream
Tssr104275	transcription start site region 104275	1880 bp downstream
Tssr104276	transcription start site region 104276	1869 bp downstream
Tssr104277	transcription start site region 104277	1595 bp downstream
Tssr104278	transcription start site region 104278	1574 bp downstream
Tssr104279	transcription start site region 104279	1517 bp downstream
Tssr104280	transcription start site region 104280	1505 bp downstream
Tssr104281	transcription start site region 104281	1491 bp downstream
Tssr104282	transcription start site region 104282	1421 bp downstream
Tssr104283	transcription start site region 104283	1268 bp downstream
Tssr104284	transcription start site region 104284	1208 bp downstream
Tssr104285	transcription start site region 104285	1178 bp downstream
Tssr104286	transcription start site region 104286	1145 bp downstream
Tssr104287	transcription start site region 104287	1121 bp downstream
Tssr104288	transcription start site region 104288	1081 bp downstream
Tssr104289	transcription start site region 104289	1073 bp downstream
Tssr104290	transcription start site region 104290	1025 bp downstream
Tssr104291	transcription start site region 104291	1010 bp downstream
Tssr104292	transcription start site region 104292	913 bp downstream
Tssr104293	transcription start site region 104293	806 bp downstream
Tssr104294	transcription start site region 104294	772 bp downstream
Tssr104295	transcription start site region 104295	728 bp downstream
Tssr104296	transcription start site region 104296	704 bp downstream
Tssr104297	transcription start site region 104297	681 bp downstream
Tssr104298	transcription start site region 104298	647 bp downstream
Tssr104299	transcription start site region 104299	613 bp downstream
Tssr104300	transcription start site region 104300	593 bp downstream
Tssr104301	transcription start site region 104301	473 bp downstream
Tssr104302	transcription start site region 104302	459 bp downstream
Tssr104303	transcription start site region 104303	440 bp downstream
Tssr104304	transcription start site region 104304	398 bp downstream
Tssr104305	transcription start site region 104305	376 bp downstream
Tssr104306	transcription start site region 104306	361 bp downstream
Tssr104307	transcription start site region 104307	344 bp downstream
Tssr104308	transcription start site region 104308	271 bp downstream
Tssr104309	transcription start site region 104309	247 bp downstream
Tssr104310	transcription start site region 104310	161 bp downstream
Tssr104311	transcription start site region 104311	112 bp downstream
Tssr104312	transcription start site region 104312	43 bp downstream
Tssr104313	transcription start site region 104313	27 bp downstream
Tssr104314	transcription start site region 104314	374 bp upstream
Tssr110222	transcription start site region 110222	1847 bp upstream
Tssr110223	transcription start site region 110223	1488 bp upstream
Tssr110224	transcription start site region 110224	1424 bp upstream
Tssr110225	transcription start site region 110225	1208 bp upstream
Tssr110226	transcription start site region 110226	1168 bp upstream
Tssr110227	transcription start site region 110227	1155 bp upstream
Tssr110228	transcription start site region 110228	1095 bp upstream
Tssr110229	transcription start site region 110229	1075 bp upstream
Tssr110230	transcription start site region 110230	1038 bp upstream