rs29437098 SNP Detail

Summary

• ID
  rs29437098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29454927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA GTCTGCATGA AATAGTAATT
  R
  CATTGTGCAT TTTTGCATGC CTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38797428	mCV25280092	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss131895764	ENSMUSSNP6632214	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323610827	CHEV_11_29404927	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29437098					SNP	G	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29454927 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	727 bp distal
Rr239824	regulatory region 239824	874 bp proximal
Rr249497	regulatory region 249497	within coordinates
Tssr100714	transcription start site region 100714	938 bp downstream
Tssr100715	transcription start site region 100715	633 bp upstream