rs29437209 SNP Detail

Summary

• ID
  rs29437209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70909783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCTCTCAG ACACATTTTT GGGTGGGCGG CTCCCGCACT
  TCTGATTCAC TACAGGTCTG GATTTCATTT GTCTGAAACT GACCTGGCCC TTCACGAAGG
  R
  GCACACCCTT CTCAGGTCAC TGGCTTGGCA CCCTTGGGAA TATCCCAAAC CCTAGAGTCA
  GCTCCGGATG TCTCCACCCA CCCCTGGGAC CAGACCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38797644	mCV24105031	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss132379928	ENSMUSSNP4508400	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss323738901	CHEV_11_70832459	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29437209					SNP	G	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70909783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	7 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	654 bp upstream
Rr369277	regulatory region 369277	822 bp upstream
Rr402697	regulatory region 402697	248 bp upstream
Rr450471	regulatory region 450471	275 bp proximal
Rr450472	regulatory region 450472	665 bp proximal
Rr450473	regulatory region 450473	874 bp proximal
Tssr102806	transcription start site region 102806	613 bp upstream
Tssr102807	transcription start site region 102807	636 bp upstream
Tssr102808	transcription start site region 102808	669 bp upstream
Tssr102809	transcription start site region 102809	684 bp upstream
Tssr102810	transcription start site region 102810	911 bp upstream
Tssr102811	transcription start site region 102811	938 bp upstream
Tssr109052	transcription start site region 109052	436 bp upstream
Tssr109053	transcription start site region 109053	276 bp downstream
Tssr109054	transcription start site region 109054	313 bp downstream