rs29437514 SNP Detail

Summary

• ID
  rs29437514
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115901751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGTGGACA TAGGAAAAAC
  GCGTGCCTTA CCAGCCTGCT CCACTCAGGG AGCCACCCAC TCTGCTGCCC TCTGAGTGTG
  CTGGCTTAAT CTTCCTACTA GCCTTCCCGA TTTAGGGTGG CAGAGGCCAG CAAGCTAACA
  ATTGAATTCG GGCTCCTCTA ATCATACAAA GGAAACCTAG GGCAAGTTCC AAGCCTCCAG
  R
  ACCTCAATGG CTTTATCAGT ACAATGGGAT GCTCCACCCT GGAGGAATGC CGAGATGGGG
  TGAGATGATC CTCCCAGAAG CAGCCTGAGT GAGTCCTATA CCTGGGTAAT GTTGAATCAC
  TCCCTTGACA TAATTGGCCC ACTGTGGGAT TCCAGGCTCC AAGGACCACT GGGCTGAGGG
  CAGTGGGAAC TGCAGTCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38798269	mCV24180291	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29437514					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115901751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4157	CpG island 4157	1320 bp proximal
Galk1	galactokinase 1	within coordinates
Gm73084	predicted gene, 73084	863 bp upstream
Rr369447	regulatory region 369447	1283 bp upstream
Rr460121	regulatory region 460121	539 bp proximal
Rr460122	regulatory region 460122	1784 bp proximal
Tssr111809	transcription start site region 111809	1753 bp downstream
Tssr111810	transcription start site region 111810	1788 bp downstream