rs29437631 SNP Detail

Summary

• ID
  rs29437631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5789230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATGTTTG GTGCCGTCGA
  GTGAGAATGT TTCAGATCCT TGGAACTTGA GTTAAGAACA TTTGTGAGCC GCTGCCCCTG
  TGAATGCTGG GAATCTAACT CAGGTCCTCA GCAGGAACAA GTGCTCTTAA CCAATAAGTC
  ATCTCTCTAG CCCCTTAAAA AAATTTTTTT TTAATTATGT GCTTAATTGT TTTGCCTGAA
  Y
  GCATGCATGT ACACCACGTG TATGCCTGGT GCGGGCAGAG ATCTTGAACT GCAGTTAAAG
  ATGGCTGGGA ACTGAACCTG GGCTCTCTGC AAGAGCAGCA AGTGCTCTTA ACTCCCAAGC
  TATCTCTCCA GCCCCATTGG AAGATTTTTG TGATCTAAGG AGCACAACCA ACTGGAGGAA
  AAGAATGGCA AGTGGAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss38795315	mCV25062603	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss131639990	ENSMUSSNP2868201	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29437631					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5789230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	1166 bp distal
Polm	polymerase (DNA directed), mu	1214 bp upstream
Rr369123	regulatory region 369123	1287 bp downstream
Rr385539	regulatory region 385539	258 bp upstream
Rr442170	regulatory region 442170	724 bp distal
Rr442171	regulatory region 442171	1180 bp distal
Tssr106647	transcription start site region 106647	1494 bp upstream
Tssr106648	transcription start site region 106648	1472 bp upstream
Tssr106649	transcription start site region 106649	1395 bp upstream