rs29438138 SNP Detail

Summary

• ID
  rs29438138
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44511367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG CCCGTGGAGA TTGAGAGGAC
  K
  GCCTTTGTGG GGTTCGTGGA GAAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38795904	mCV24316358	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss132082955	ENSMUSSNP5089206	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss323654522	CHEV_11_44434042	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29438138					SNP	T	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44511367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2763	CpG island 2763	1911 bp distal
Cpgi2764	CpG island 2764	within coordinates
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	948 bp distal
Ebf1	early B cell factor 1	within coordinates
Rr445654	regulatory region 445654	1824 bp distal
Tssr3469	transcription start site region 3469	277 bp upstream
Tssr3470	transcription start site region 3470	1070 bp upstream
Tssr101044	transcription start site region 101044	1949 bp downstream
Tssr101045	transcription start site region 101045	610 bp upstream
Tssr101046	transcription start site region 101046	642 bp upstream
Tssr101047	transcription start site region 101047	656 bp upstream
Tssr101048	transcription start site region 101048	671 bp upstream