rs29438506 SNP Detail

Summary

• ID
  rs29438506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:44591805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTCAGAA AAATTTAGAT
  GCTTCCCCAG AAGATCCAGC CTCAGTTTCC TGTGCCCATA TGGTGGCTCG TGACTCTCTG
  TAACTCCAGT CCTGGAAAAC CTGACACCCT CTTCTGGCCT CTGTATACCA AGCATGCTGT
  GGCACATAGG CAAACATGCT GACAAGACAC CACCACACAT AAATAAATAA ATGAATGAAT
  R
  AATAAATAAA CAAACCGTAT CATAGTCAAT TCTCATTGTA GATATATTTA ATCTTCCCGA
  TTCCAACTAT GTAAAAGTAA AGAAAACCAC AAAAGAAAAA AATTAATTTG AAGAGCAAAG
  AAACATTCAG ATAATTCCTT GTATAGCAAT CGGTATATAT CTGCACCGGA AATTAAATCT
  ACTTATAATC AGACTTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss38802238	mCV24312825	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss132083723	ENSMUSSNP4089027	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29438506					SNP	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44591805 () rs orientation: forward

Symbol	Name	Function Class
Ebf1	early B cell factor 1	Intron
Rr445671	regulatory region 445671	565 bp distal
Tssr101056	transcription start site region 101056	1949 bp downstream