rs29438698 SNP Detail

Summary

• ID
  rs29438698
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:20779986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTA GTGACACTGT GCAAGTAGGG
  K
  AAGGGGAGGA GGCAGCCGCG GGACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38795189	mCV23238056	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	G
ss131781701	ENSMUSSNP3556879	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		G
ss323592823	CHEV_11_20729989	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29438698					SNP	G	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:20779986 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2627	CpG island 2627	292 bp proximal
Gm12037	predicted gene 12037	1369 bp downstream
Lgalsl	galectin like	within coordinates
Rr443483	regulatory region 443483	1060 bp proximal
Rr443484	regulatory region 443484	1411 bp proximal
Rr443485	regulatory region 443485	1946 bp proximal
Tssr3438	transcription start site region 3438	792 bp downstream
Tssr107046	transcription start site region 107046	1023 bp downstream
Tssr107047	transcription start site region 107047	1074 bp downstream
Tssr107048	transcription start site region 107048	1187 bp downstream
Tssr107049	transcription start site region 107049	1218 bp downstream
Tssr107050	transcription start site region 107050	1237 bp downstream
Tssr107051	transcription start site region 107051	1324 bp downstream