rs29438834 SNP Detail

Summary

• ID
  rs29438834
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58276704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTG GGTCTCATCC ACTATGTGGT
  R
  CTTCTGGAAA ATTCTTCTGC ATGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38797524	mCV25372096	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss132196825	ENSMUSSNP1079665	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss323690046	CHEV_11_58199380	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29438834					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58276704 () rs orientation: forward

Symbol	Name	Function Class
Lypd8	LY6/PLAUR domain containing 8	within coordinates
Tssr101735	transcription start site region 101735	1258 bp downstream
Tssr101736	transcription start site region 101736	1190 bp downstream
Tssr101737	transcription start site region 101737	1150 bp downstream
Tssr101738	transcription start site region 101738	1132 bp downstream
Tssr101739	transcription start site region 101739	845 bp upstream
Tssr101740	transcription start site region 101740	909 bp upstream
Tssr101741	transcription start site region 101741	937 bp upstream
Tssr108157	transcription start site region 108157	892 bp downstream
Tssr108158	transcription start site region 108158	944 bp downstream