rs29438996 SNP Detail

Summary

• ID
  rs29438996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:85059365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGACAATT TGGAGGGTTG ATTCTTTGCT TGCACATGTG
  GGTCCTAGTG GTCAAACTCA GGCTGTCATC ACACTTGGAG GCAAAGCCCT TATCCACTGA
  R
  CCATCTCACT ATCCCATGAT TTATAGCTTT TAGAAATATA TGTTGCAATG AATAACACTG
  TTAGATGAGT TAACTTGCCC TACAGAAAAA TTTTATTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38803064	mCV24662271	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	A	G
ss132490417	ENSMUSSNP1541901	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29438996					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:85059365 () rs orientation: forward

Symbol	Name	Function Class
Chct1	CHD1 helical C-terminal domain containing 1	1865 bp upstream
Cpgi3451	CpG island 3451	1565 bp proximal
Gm73307	predicted gene, 73307	1076 bp downstream
Rr453329	regulatory region 453329	1406 bp proximal
Rr453330	regulatory region 453330	1679 bp proximal
Rr453331	regulatory region 453331	1876 bp proximal