rs29439367 SNP Detail

Summary

• ID
  rs29439367
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:45947636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGGCGGGG GGGTGGTGGT GTCAAAAGCA TACCAGTGGG
  ATAGAAAATC AAAGGTTTCC GAGAGATTAG GGTAGGGTGG TTTACTGGTT ATCTCTGCCT
  R
  TACACTTAGC ATCTCTGAAA GACCATAAAA GAACCATGCG CACCCATTAT GCAGATCGTA
  AGCTGAAGTT CACTAACAAA AACCCAGGTG TGTATAAGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38796948	mCV22546694	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss132095894	ENSMUSSNP1911643	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss323657876	CHEV_11_45870311	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29439367					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:45947636 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adam19	ADAM metallopeptidase domain 19			Intron
				Noncoding-Transcript-Variant
Cpgi2772	CpG island 2772			182 bp distal
Cpgi2773	CpG island 2773			253 bp proximal
Gm72342	predicted gene, 72342			within coordinates
Rr402508	regulatory region 402508			803 bp downstream
Rr445869	regulatory region 445869			807 bp distal
Rr445870	regulatory region 445870			within coordinates
Rr445871	regulatory region 445871			1200 bp proximal
Rr445872	regulatory region 445872			1364 bp proximal
Tssr3474	transcription start site region 3474			842 bp downstream
Tssr101088	transcription start site region 101088			741 bp downstream
Tssr101089	transcription start site region 101089			712 bp downstream
Tssr101090	transcription start site region 101090			634 bp downstream
Tssr101091	transcription start site region 101091			579 bp downstream
Tssr107582	transcription start site region 107582			1300 bp downstream
Tssr107583	transcription start site region 107583			1365 bp downstream