rs29439469 SNP Detail

Summary

• ID
  rs29439469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95721015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAT CTGCTGTCTA CTCTGCTCTG
  M
  CACCAGAAAC CTCCAACCCA GTTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss38801920	mCV23213461	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss132668224	ENSMUSSNP4777506	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss323819191	CHEV_11_95691503	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29439469					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95721015 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	22 bp proximal
Phospho1	phosphatase, orphan 1	within coordinates
Rr455200	regulatory region 455200	1706 bp distal
Rr455202	regulatory region 455202	492 bp proximal
Rr455203	regulatory region 455203	1703 bp proximal
Tssr3654	transcription start site region 3654	333 bp upstream
Tssr104394	transcription start site region 104394	564 bp upstream
Tssr104395	transcription start site region 104395	1135 bp upstream
Tssr104396	transcription start site region 104396	1172 bp upstream
Tssr104397	transcription start site region 104397	1335 bp upstream
Tssr110283	transcription start site region 110283	1612 bp downstream