rs29439522 SNP Detail

Summary

• ID
  rs29439522
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57721878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA ATTCATCTTG TAAGGCCCTA
  M
  GATCACTTTT AAAAAGCAAA ATTCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38802104	mCV23860842	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss132181300	ENSMUSSNP1935283	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss323685768	CHEV_11_57644554	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29439522					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57721878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2911	CpG island 2911	1310 bp distal
Cpgi2912	CpG island 2912	183 bp proximal
Cpgi2913	CpG island 2913	1630 bp proximal
Gm32915	predicted gene, 32915	1056 bp upstream
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447813	regulatory region 447813	1568 bp distal
Rr447814	regulatory region 447814	305 bp distal
Rr447815	regulatory region 447815	1085 bp proximal
Rr447816	regulatory region 447816	1756 bp proximal
Tssr3506	transcription start site region 3506	1781 bp upstream
Tssr101646	transcription start site region 101646	634 bp upstream
Tssr101647	transcription start site region 101647	642 bp upstream
Tssr101648	transcription start site region 101648	655 bp upstream
Tssr108125	transcription start site region 108125	1987 bp upstream
Tssr108126	transcription start site region 108126	1806 bp upstream
Tssr108127	transcription start site region 108127	1739 bp upstream
Tssr108128	transcription start site region 108128	1727 bp upstream
Tssr108129	transcription start site region 108129	1592 bp upstream
Tssr108130	transcription start site region 108130	711 bp downstream
Tssr108131	transcription start site region 108131	952 bp downstream
Tssr108132	transcription start site region 108132	1032 bp downstream
Tssr108133	transcription start site region 108133	1090 bp downstream
Tssr108134	transcription start site region 108134	1627 bp downstream