rs29439866 SNP Detail

Summary

• ID
  rs29439866
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102210598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCCGAC TCCTCGCTCT
  CCTGTCGGGG CGGGCAAGGC AGCTTGAGGC CGGAGGGGGA TCTGTGAGGG ATCCTGCCTG
  CTCCCTCTCC CATTGCTCCA TCCTTGCTGT CTCCTGCCTC CTCCTCTCCT GCGTTTTTCC
  AACTCTCCCC TGTCGCCACT GGTGTGTGTC TGTGTGCGCA GGTTTTCTCT CTCTCTCTTT
  Y
  TTTTTTTTTT TTTATTGCTT TGCTTTTGCA ACCCTGAAGC TAAAGCGGGA TGGGGGCGAA
  GGGGAATGTT ACAAAAAAGA AAAAGGGAAA AAAAAAAGCC TCCTAGGTTT GCAACGTATG
  AAAATACCCG GGAAGTACCC CGCCTCGTTT GGGTCTCGGT GCCCGGCGAG GGCCTTCCGG
  ATTTCAGAGC CAGTCTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38801720	mCV23672152	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29439866					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102210598 () rs orientation: forward

Symbol	Name	Function Class
C030013E06Rik	RIKEN cDNA C030013E06 gene	within coordinates
Cpgi3917	CpG island 3917	within coordinates
Rr245873	regulatory region 245873	within coordinates
Tssr111028	transcription start site region 111028	1987 bp upstream
Tssr111029	transcription start site region 111029	1956 bp upstream
Tssr111030	transcription start site region 111030	1895 bp upstream
Tssr111031	transcription start site region 111031	1711 bp upstream
Tssr111032	transcription start site region 111032	768 bp upstream
Tssr111033	transcription start site region 111033	667 bp upstream
Tssr111034	transcription start site region 111034	423 bp upstream
Tssr111035	transcription start site region 111035	326 bp upstream
Tssr111036	transcription start site region 111036	53 bp downstream
Tssr111037	transcription start site region 111037	493 bp downstream
Ubtf	upstream binding transcription factor, RNA polymerase I	30 bp upstream