rs29439953 SNP Detail

Summary

• ID
  rs29439953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70401254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTACCAC TTCCAAGAAA CAGAGTAAGT CCTACTTTGC
  ATTTGTATCC CCCGTTCTGT GCCTCTCCTC ACCTGCTCTC TTACTACCTG GTCCAGAAAC
  R
  GTGGACCAGA CTGAACTCCT AGAGAGTTCC TTCCAAATAG CCCATCCAGC CCTTTACAGA
  TCTTAGTAGA TCCTTGCACT GGTTGGTGGT AGAGCCTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss38797608	mCV22858037	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132372160	ENSMUSSNP4669719	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss323735914	CHEV_11_70323930	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs29439953					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70401254 () rs orientation: forward

Symbol	Name	Function Class
Gm73079	predicted gene, 73079	158 bp upstream
Rr235912	regulatory region 235912	within coordinates
Rr247104	regulatory region 247104	53 bp distal
Rr251336	regulatory region 251336	1662 bp proximal
Tm4sf5	transmembrane 4 superfamily member 5	within coordinates
Tssr102717	transcription start site region 102717	635 bp downstream
Tssr102718	transcription start site region 102718	438 bp downstream
Tssr102719	transcription start site region 102719	229 bp downstream
Tssr102720	transcription start site region 102720	173 bp downstream
Tssr102721	transcription start site region 102721	409 bp upstream
Tssr102722	transcription start site region 102722	634 bp upstream
Tssr102723	transcription start site region 102723	662 bp upstream
Tssr108976	transcription start site region 108976	740 bp downstream