rs29440458 SNP Detail

Summary

• ID
  rs29440458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121280239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTATCC TTTCAAAGAG
  TTGACTATAA TAAGCTCTAA TTACAAGATA TGGCTGCCAG TCTAGAATAG GTAATTGAGA
  TAGGGTTTTT CGAGACAGGG TTTCCCTGAG TAGCCCTTTC TGTCCTGAAA CTGGCTTTGT
  AGATCAGGCT GGTCTTGAGA TCTGCCTGCC TCTGCCTCCT GAGTGTGGTA TTAAAGACAT
  Y
  GGCCACCACT ACCCAGCTAG AATGGATGGT CTCGCTGAGC CATTTTTGAC TCAGAATACT
  ATCTTTGACT CAAGATTACA CTGTTGCTAA CCAAGAATAC CTGAGCTGTA ATTATTTCAG
  AGGACCATGA CATGGCAACA ATCGCCCACA CAGAAAAACC TTCCTTAGAG AGAGCGCTTT
  AGAATGTCTG AGTCCAGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38802996	mCV24693207	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss132911616	ENSMUSSNP3347530	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29440458					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121280239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4344	CpG island 4344	891 bp distal
Rab40b	Rab40B, member RAS oncogene family	1162 bp upstream
Tssr112458	transcription start site region 112458	1146 bp upstream