rs29440684 SNP Detail

Summary

• ID
  rs29440684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69047348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACTCAGG GTCTCCCACA TTTTCTGTAT GTTCTCTACA
  GTGAACTGAA GTCCTTTAGT CTTATTCTCC TGCCTCAGCT GTTCTCTCAA CTGTCCTCTG
  Y
  GTATCAACAC CAGGTTCTCC TAAGTAGATA CTGGCTAACA AGGAAGCAGC AGCTACAGGC
  TTTAGGCTCC AAACCCTTCC ACCCTGCATC TCTTGTCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38802622	mCV24154331	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss132350000	ENSMUSSNP3582148	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss323727813	CHEV_11_68970024	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29440684					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69047348 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	550 bp upstream
Cpgi3111	CpG island 3111	417 bp proximal
Rr449891	regulatory region 449891	220 bp proximal
Rr449892	regulatory region 449892	478 bp proximal
Rr449893	regulatory region 449893	1587 bp proximal
Tssr102419	transcription start site region 102419	366 bp upstream
Tssr102420	transcription start site region 102420	391 bp upstream
Tssr102421	transcription start site region 102421	510 bp upstream
Tssr102422	transcription start site region 102422	531 bp upstream
Tssr102423	transcription start site region 102423	541 bp upstream
Tssr102424	transcription start site region 102424	562 bp upstream