rs29440951 SNP Detail

Summary

• ID
  rs29440951
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116742995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GGGCTTCTCG ATCGCGACCT GGACCTTGAC CTCGAGCGGG ATCTGGAGAC
  S
  GAGGAGGACT TGGACTTGGA TCTTCGGGCA GATCTGGACT TGGAGGTTGA           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38803928	mCV22643626	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss132892179	ENSMUSSNP2926950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323867020	CHEV_11_116713483	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29440951					SNP	C	C	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116742995 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	271 bp upstream
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	825 bp upstream
Rr403147	regulatory region 403147	1377 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	15 bp upstream
Tssr106001	transcription start site region 106001	316 bp upstream
Tssr106002	transcription start site region 106002	1085 bp upstream
Tssr106003	transcription start site region 106003	1288 bp upstream
Tssr106004	transcription start site region 106004	1583 bp upstream
Tssr111999	transcription start site region 111999	1521 bp upstream
Tssr112000	transcription start site region 112000	1238 bp upstream
Tssr112001	transcription start site region 112001	975 bp upstream
Tssr112002	transcription start site region 112002	898 bp upstream
Tssr112003	transcription start site region 112003	854 bp upstream
Tssr112004	transcription start site region 112004	694 bp upstream
Tssr112005	transcription start site region 112005	16 bp upstream
Tssr112006	transcription start site region 112006	within coordinates
Tssr112007	transcription start site region 112007	33 bp downstream
Tssr112008	transcription start site region 112008	154 bp downstream
Tssr112009	transcription start site region 112009	259 bp downstream
Tssr112010	transcription start site region 112010	914 bp downstream