rs29441106 SNP Detail

Summary

• ID
  rs29441106
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:87685468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG TGCCAAAAGG AGGGTGGACT
  R
  AGGGATTGGG GGTAGGGGGT GGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38804638	mCV22737719	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132512851	ENSMUSSNP6242789	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss323773647	CHEV_11_87608144	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29441106					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:87685468 () rs orientation: forward

Symbol	Name	Function Class
Gm11505	predicted gene 11505	922 bp downstream
Mpo	myeloperoxidase	Intron
Rr370606	regulatory region 370606	95 bp downstream
Rr453904	regulatory region 453904	1509 bp proximal
Rr453905	regulatory region 453905	1563 bp proximal
Tssr3631	transcription start site region 3631	108 bp upstream
Tssr3632	transcription start site region 3632	620 bp upstream
Tssr3633	transcription start site region 3633	1671 bp upstream
Tssr103978	transcription start site region 103978	1227 bp downstream
Tssr103979	transcription start site region 103979	1197 bp downstream
Tssr103980	transcription start site region 103980	1159 bp downstream
Tssr103981	transcription start site region 103981	837 bp downstream
Tssr103982	transcription start site region 103982	814 bp downstream
Tssr103983	transcription start site region 103983	795 bp downstream
Tssr103984	transcription start site region 103984	610 bp downstream
Tssr103985	transcription start site region 103985	585 bp downstream
Tssr103986	transcription start site region 103986	571 bp downstream
Tssr103987	transcription start site region 103987	430 bp downstream
Tssr103988	transcription start site region 103988	106 bp downstream
Tssr103989	transcription start site region 103989	137 bp upstream
Tssr103990	transcription start site region 103990	571 bp upstream
Tssr103991	transcription start site region 103991	644 bp upstream
Tssr103992	transcription start site region 103992	665 bp upstream
Tssr103993	transcription start site region 103993	1141 bp upstream
Tssr103994	transcription start site region 103994	1213 bp upstream
Tssr103995	transcription start site region 103995	1389 bp upstream
Tssr103996	transcription start site region 103996	1441 bp upstream
Tssr103997	transcription start site region 103997	1611 bp upstream
Tssr103998	transcription start site region 103998	1718 bp upstream
Tssr109976	transcription start site region 109976	1779 bp downstream