rs29441677 SNP Detail

Summary

• ID
  rs29441677
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28805370 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG TATATGAAAA ACACATTTTC
  M
  TACTTCTTTC CAATTCTTAA AATTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38805426	mCV24782140	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss131883423	ENSMUSSNP1522284	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss323609592	CHEV_11_28755370	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29441677					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28805370 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2668	CpG island 2668	1716 bp distal
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	within coordinates
Rr246450	regulatory region 246450	1169 bp distal
Tssr3451	transcription start site region 3451	1597 bp downstream
Tssr3452	transcription start site region 3452	1572 bp downstream
Tssr100687	transcription start site region 100687	1048 bp downstream