rs29441897 SNP Detail

Summary

• ID
  rs29441897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:95722205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACG GGACTGGGGA TTGGTTAGGA
  Y
  CACCTAGTTT TACTACCCTC CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss38804802	mCV23213481	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss132668256	ENSMUSSNP285612	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29441897					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:95722205 () rs orientation: forward

Symbol	Name	Function Class
Abi3	ABI family member 3	within coordinates
Cpgi3603	CpG island 3603	within coordinates
Phospho1	phosphatase, orphan 1	within coordinates
Rr369341	regulatory region 369341	1809 bp upstream
Rr455202	regulatory region 455202	677 bp distal
Rr455203	regulatory region 455203	513 bp proximal
Tssr3654	transcription start site region 3654	835 bp downstream
Tssr104394	transcription start site region 104394	611 bp downstream
Tssr104395	transcription start site region 104395	42 bp downstream
Tssr104396	transcription start site region 104396	6 bp downstream
Tssr104397	transcription start site region 104397	145 bp upstream
Tssr110283	transcription start site region 110283	422 bp downstream