rs29442383 SNP Detail

Summary

• ID
  rs29442383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69046461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACATGGTT TCCCCATTCC AAAAGCACTG AATTGTGTAG
  GAGGTGGCAA GTTTTGTCTG TTCTGAAACT TTGCATCAGT GGAATAAGAA ATGTCTGAAT
  R
  TATGGTATAG TTCACTCCAT ATATAATCTC TAGGGTGTTT ATCTGTAAAA TACCTTAATT
  TGGAGACTGG TATGGCTCAG CAGATAAGAG AACTGCTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38807874	mCV23167344	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132349964	ENSMUSSNP4842524	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss323727807	CHEV_11_68969137	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29442383					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69046461 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	1437 bp upstream
Cpgi3111	CpG island 3111	1304 bp proximal
Rr449891	regulatory region 449891	1107 bp proximal
Rr449892	regulatory region 449892	1365 bp proximal
Tssr102419	transcription start site region 102419	1253 bp upstream
Tssr102420	transcription start site region 102420	1278 bp upstream
Tssr102421	transcription start site region 102421	1397 bp upstream
Tssr102422	transcription start site region 102422	1418 bp upstream
Tssr102423	transcription start site region 102423	1428 bp upstream
Tssr102424	transcription start site region 102424	1449 bp upstream