rs29442717 SNP Detail

Summary

• ID
  rs29442717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88534921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAAAAGCT GGGAGCTGTT TAGAGAGATA TGAGCTTAGT
  TCATTTTCCT CTTAACACTT CCAAGTCTAT ATACAGTGGC AGGAAGACAG TTTGGTGGTC
  R
  ATGAAACATT CCTGAAAGTC CTCTTCCTAC CATCAGACAC CTGGGAAATT CAGAAGGAAA
  AGAAGCGCAT GAATCACGTA AAAAAGGGAT CTCTATGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38807305	mCV24868917	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss132538532	ENSMUSSNP20978	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29442717					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88534921 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Rr237566	regulatory region 237566	1880 bp proximal
Rr252316	regulatory region 252316	within coordinates
Tssr110026	transcription start site region 110026	543 bp upstream