rs29442765 SNP Detail

Summary

• ID
  rs29442765
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGAAACA GCCCAGCTCC AGCCCAAGCT GTCTTTTGGG
  CTTTGTGTGC ACTCTCTTTC CTCTCCTTAG TTGTGGGCGC ATGTGATGTA TAGAATGTTT
  Y
  CCTATTTTAC CTTGCTGAGA AACAGATCCA AACTTAAGCC AGTTTCTGTC CAGCACTTGA
  GAGGTCTTTC AAGAAGACCC CCTTAGAGTG TGACCAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38806306	mCV23022190	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss132042375	ENSMUSSNP4230449	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29442765					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	1261 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	559 bp upstream
Rr445405	regulatory region 445405	1997 bp distal
Rr445406	regulatory region 445406	404 bp distal
Rr445407	regulatory region 445407	1564 bp proximal
Rr445408	regulatory region 445408	1690 bp proximal
Tssr100975	transcription start site region 100975	1979 bp downstream
Tssr100976	transcription start site region 100976	1809 bp downstream
Tssr100977	transcription start site region 100977	1321 bp downstream
Tssr100978	transcription start site region 100978	985 bp downstream
Tssr100979	transcription start site region 100979	909 bp downstream
Tssr100980	transcription start site region 100980	524 bp downstream
Tssr100981	transcription start site region 100981	480 bp downstream
Tssr100982	transcription start site region 100982	443 bp downstream
Tssr100983	transcription start site region 100983	431 bp downstream