rs29442827 SNP Detail

Summary

• ID
  rs29442827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83337365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTGAAGCT TGCCATTCTG TGAGCCCCCA AGGTTTTCCT
  GTCTCCATCC CCCAGTTGCT GGGGTTACGT GCGTGCTGAG AATCTGAACC CAGGTCCTCA
  Y
  ACTTGCACAG CATGGAACCG TCTCCCCAGT TTCATGACCA CCGTAATGCC AGGGTTCCAG
  GTGTGTGCCA CCACGCCTGG CTGATATATC TAGTTTCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss38807412	mCV22342792	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss132469343	ENSMUSSNP6123219	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29442827					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83337365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3416	CpG island 3416	1218 bp distal
Mmp28	matrix metallopeptidase 28 (epilysin)	within coordinates
Rr452961	regulatory region 452961	1297 bp distal
Rr452962	regulatory region 452962	1068 bp proximal