rs29442832 SNP Detail

Summary

• ID
  rs29442832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29453030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACAGAAAA TAAAGTATTT TTTGCATTTA AATGTTTGGT
  GTTTTAACAT TCTGTAATAA TTTAAAATAT GTCTTTTTTT CCAAATTGTG AGTTATTTTA
  Y
  AGTTATTTGA GCCTGAATTG TTGTTTTTTT ACTTGCTTTA TTCATTCATT TAGTCTTGAA
  TATATTGAAT GACTGTTTAA TGTGAAACTC TTTAGGATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38807421	mCV25280106	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss131895751	ENSMUSSNP6199592	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
ss323610823	CHEV_11_29403030	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29442832					SNP	T	T	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29453030 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	771 bp proximal
Rr249497	regulatory region 249497	1371 bp proximal
Tssr100714	transcription start site region 100714	947 bp upstream