rs29443220 SNP Detail

Summary

• ID
  rs29443220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAGGAAGA CTGAGGGCAA GGCGCCAGGA CAGACATCAG
  CATCAAGAGC CCCTAGAATC GCGCAAGTGG GTAATAGGAA TATGGCACAA ATAGCGGGGA
  R
  TCAGCGACGG TTAACAACCC AGCCACTGCA CTGTTTGACA GGCTCCCAAT CCTGGGCCAC
  TAGGGCGACC TACCGCGCGC CTGCTTACCC AGCCTCCGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38808866	mCV22780248	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
ss132355573	ENSMUSSNP2721091	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		A
ss323729418	CHEV_11_69222077	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29443220					SNP	G	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299401 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72933	predicted gene, 72933	1179 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1299 bp upstream
Rr402670	regulatory region 402670	20 bp upstream
Rr402671	regulatory region 402671	784 bp upstream
Tssr3543	transcription start site region 3543	105 bp downstream
Tssr102455	transcription start site region 102455	1697 bp downstream
Tssr102456	transcription start site region 102456	336 bp upstream
Tssr102457	transcription start site region 102457	706 bp upstream
Tssr102458	transcription start site region 102458	1099 bp upstream
Tssr102459	transcription start site region 102459	1119 bp upstream
Tssr102460	transcription start site region 102460	1152 bp upstream
Tssr102461	transcription start site region 102461	1195 bp upstream
Tssr102462	transcription start site region 102462	1223 bp upstream
Tssr102463	transcription start site region 102463	1976 bp upstream
Tssr108661	transcription start site region 108661	1805 bp upstream
Tssr108662	transcription start site region 108662	955 bp upstream
Tssr108663	transcription start site region 108663	926 bp upstream
Tssr108664	transcription start site region 108664	744 bp upstream
Tssr108665	transcription start site region 108665	13 bp upstream
Tssr108666	transcription start site region 108666	571 bp downstream
Tssr108667	transcription start site region 108667	817 bp downstream
Tssr108668	transcription start site region 108668	838 bp downstream
Tssr108669	transcription start site region 108669	853 bp downstream
Tssr108670	transcription start site region 108670	972 bp downstream
Tssr108671	transcription start site region 108671	1309 bp downstream
Tssr108672	transcription start site region 108672	1793 bp downstream
Tssr108673	transcription start site region 108673	1821 bp downstream
Tssr108674	transcription start site region 108674	1865 bp downstream