rs29443320 SNP Detail

Summary

• ID
  rs29443320
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88862755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGCT ACACAGAGAA ACCCTGTCTT
  R
  AAAAAACAAA ACAAAACAAC AACAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss38808767	mCV24310024	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132548836	ENSMUSSNP5844794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29443320					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88862755 () rs orientation: forward

Symbol	Name	Function Class
2210409E12Rik	RIKEN cDNA 2210409E12 gene	728 bp upstream
Cpgi3523	CpG island 3523	1817 bp proximal
Gm10367	predicted gene 10367	447 bp downstream
Rr402857	regulatory region 402857	1581 bp downstream
Tssr104058	transcription start site region 104058	1666 bp downstream
Tssr104059	transcription start site region 104059	1990 bp upstream
Tssr104060	transcription start site region 104060	1999 bp upstream