rs29443327 SNP Detail

Summary

• ID
  rs29443327
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62020935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCGGTTATGC ACAGTGACAC ATCTTCACTG ATGTTGAAGC TATGAAAAGG ATGGGAAAGC
  AAGGAACTTT AGAGATTCAT GGAATGAAGA TCTGTAGTTG ACAGTGTCCT GGACAATAGT
  GTCACAATGC CAGAGACAAA ACGAATTCGC TGTAACCTAG CCCAGGGCCA GCAGAACTGT
  CATTCATTAT ACACTGATTA GGCATAAGGG AAAGGATGCT TGCAGGCAAG AAAGGTTGCA
  TAGATCAGAA AGCTACAGAA AATTGTTTAA AATACCAATT CAGTATTGCA AAAAGTAGAG
  R
  GGGAAAAAAA AGGCATCCTG ATGCATATGG AACAGGGATT CTGGTGTGCA AATAGCATTT
  TAGATGGTGA AAACTGTGAC CAGAAGCCTA TAGGAATCCA ACACTGTTTC CGTGGGGAGC
  AACAGTTCAG TATTCCTTGT TGATTGAGCA CAGTGGTTTC TATGAGGGGA GCTGATTGTG
  TGCTCTGTGG CTGGATTAAT TGACTAATAC CAGAGTGACA GTGCCCGTTG TTCGTTGCCT
  TTGTCATGGA CTGTAGAGCA GTGACACTCA GTGTCACCCA GGTTCAATAG CACTTCTTGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38807455	mCV23331891	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss132281292	ENSMUSSNP2505920	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29443327					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62020935 () rs orientation: forward

Symbol	Name	Function Class
Gm39985	predicted gene, 39985	within coordinates
Rr448791	regulatory region 448791	1958 bp distal
Rr448793	regulatory region 448793	84 bp proximal
Specc1	sperm antigen with calponin homology and coiled-coil domains 1	within coordinates
Tssr101998	transcription start site region 101998	975 bp upstream