rs29443416 SNP Detail

Summary

• ID
  rs29443416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:46709425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACACAC ATACACAACA
  TACAGACATA TACACACATA CATGCATATA CACTCACACA CAAGCACACA TGTATCTACA
  TACATAGACA TACACACATA CATGTACACA TGTTCACACA AACATAGACA TATACATGCA
  CACATACACA GAAACAGAGA GAGAAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGGGAG
  R
  GAGATTGAGA AGAGGAAGAG ATCAGCAAGA TTGGGAAAGA ATAAGACAAT ATAATGGGGT
  GAGTATAATA AAATGTATTA TATGCATATA TCAAAATGTA ATAAACCCAT AATGTGTAAT
  TAATATACAC TAATAAAACC TTTTTAAAAG AATGTTAGAT ATATTCCTTG ACAGTAGATC
  AGTTTTATCC TTGTTTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38807924	mCV25344061	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss132104570	ENSMUSSNP4110556	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss323660831	CHEV_11_46632100	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29443416					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:46709425 () rs orientation: forward

Symbol	Name	Function Class
Timd4	T cell immunoglobulin and mucin domain containing 4	Intron
Tssr101132	transcription start site region 101132	1034 bp downstream
Tssr101133	transcription start site region 101133	1008 bp downstream