rs29444558 SNP Detail

Summary

• ID
  rs29444558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69045853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAACCCTC ATTCCAGCTT TTTCTAATTT TACTGCTTTA
  AAAGAACAAA GATATTTATT TGATGTGTAT GTATGAGCAT GTATGTGAGA GTATGTGCCA
  Y
  AGTTCATGAG TTCATGTATG GGGGTCAGAG GTCAACTTTC ATCATTCAGT TCTTTCCTTG
  GACCATGTGG GCCTGGAGAC TTAAACTCAG ATCAGGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss38810388	mCV23167328	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss323727805	CHEV_11_68968529	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29444558					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69045853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3111	CpG island 3111	1912 bp proximal
Rr449891	regulatory region 449891	1715 bp proximal
Rr449892	regulatory region 449892	1973 bp proximal
Tssr102419	transcription start site region 102419	1861 bp upstream
Tssr102420	transcription start site region 102420	1886 bp upstream