rs29445002 SNP Detail

Summary

• ID
  rs29445002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62020092 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTTGTATC CCTAGATTGG TGCTTACAAC ACCTTCCTGG
  TTTGGGAAAA ATGGAAAGAG GTGAAAAGTC AGAGGAAAGT CAGGAAAACC TCTGTTCTTC
  R
  CAGAGATTAA GCTCAAGAAC CCTCTACTTT CTGGTCTGAA TTATGATGCT GTGTACAAGG
  ATCTCTTTTT TCTTTAAAAA TATTTGTTTT TTACCTTTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38809830	mCV23331878	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss132281276	ENSMUSSNP2138720	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29445002					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62020092 () rs orientation: forward

Symbol	Name	Function Class
Gm39985	predicted gene, 39985	297 bp downstream
Rr448791	regulatory region 448791	1115 bp distal
Rr448792	regulatory region 448792	1373 bp distal
Rr448793	regulatory region 448793	927 bp proximal
Specc1	sperm antigen with calponin homology and coiled-coil domains 1	within coordinates
Tssr101998	transcription start site region 101998	1818 bp upstream