rs29445136 SNP Detail

Summary

• ID
  rs29445136
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70908475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTCAAACT ATAATCTGGA AAGTCACATT CTCTTTTAGA
  TAATGGTATA AGACTTTTGT TAGGATAATC TGACTTCTAG AAGACAGATC AATGTTAAAG
  K
  TGTACCAGAA CTGAGTTTAT GAGCTGGCCC AAGAGGACTA ACAACAGTGG TAGGTAGGTG
  TGTCTGGGTG GAAAAAACAC AAAATAAGGC TGGCTATCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss38808833	mCV24105006	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss132379900	ENSMUSSNP1663718	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29445136					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70908475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3205	CpG island 3205	1315 bp proximal
Derl2	Der1-like domain family, member 2	within coordinates
Mis12	MIS12 kinetochore complex component	1962 bp upstream
Rr402697	regulatory region 402697	1556 bp upstream
Rr450471	regulatory region 450471	1583 bp proximal
Rr450472	regulatory region 450472	1973 bp proximal
Tssr102806	transcription start site region 102806	1921 bp upstream
Tssr102807	transcription start site region 102807	1944 bp upstream
Tssr102808	transcription start site region 102808	1977 bp upstream
Tssr102809	transcription start site region 102809	1992 bp upstream
Tssr109052	transcription start site region 109052	849 bp downstream
Tssr109053	transcription start site region 109053	1584 bp downstream
Tssr109054	transcription start site region 109054	1621 bp downstream