rs29445145 SNP Detail

Summary

• ID
  rs29445145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGTGTCC TAGAAAGAGA
  CTGCTCACAT CTTCCCTACC TAACCCCCCC CCCAACCCCC ATGTCCTAGA GAGAGACTGC
  TCACATTCTC TCCCAGATGA ATCAAAATGC TGAAAGCTGG CAGGTACTGA TCACTTCCTA
  TGTGGCTTGA CTTTGTGTCC TGAGCACCTC TGATACATTG GTTAGCCCTC ACTGCAGCTC
  Y
  GAGAGGTAGA TGTTAGCATT TACCTTCATC TTACAAATGA AACCCTGGGA CCTAGCAGAG
  GTAACTCACC CCATCCCACC ACTGTTGGGT AGGGGGACCG TGATTTGTAC CTGTTGTGTT
  GGTTCCAGAA GCCCTGTTGC TAACCTAGTT AGTGTTGTAA CTCCTGCCCC ATCTAAGTTA
  TCCCTAAAGA TGGAGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38809626	mCV24752474	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss323821005	CHEV_11_96405062	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29445145					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434574 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1314 bp downstream
Tssr104543	transcription start site region 104543	971 bp upstream
Tssr104544	transcription start site region 104544	1625 bp upstream
Tssr104545	transcription start site region 104545	1678 bp upstream
Tssr104546	transcription start site region 104546	1686 bp upstream
Tssr104547	transcription start site region 104547	1728 bp upstream
Tssr104548	transcription start site region 104548	1822 bp upstream
Tssr104549	transcription start site region 104549	1835 bp upstream
Tssr104550	transcription start site region 104550	1893 bp upstream
Tssr104551	transcription start site region 104551	1921 bp upstream
Tssr104552	transcription start site region 104552	1942 bp upstream