rs29445284 SNP Detail

Summary

• ID
  rs29445284
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94844829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCT AGAGGGATGG TAACTAATTG
  Y
  CCCCCACATC TCAGAGAATG GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss38809227	mCV22890644	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss132650946	ENSMUSSNP5996218	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss323817105	CHEV_11_94815317	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29445284					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94844829 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	961 bp downstream
D11Lis1	DNA segment, Chr 11, Lisse 1	534 bp distal
Gm74287	predicted gene, 74287	248 bp downstream
Gm74290	predicted gene, 74290	1408 bp upstream
Rr454892	regulatory region 454892	1437 bp distal
Rr454893	regulatory region 454893	1177 bp proximal
Tssr104295	transcription start site region 104295	1986 bp downstream
Tssr104296	transcription start site region 104296	1962 bp downstream
Tssr104297	transcription start site region 104297	1939 bp downstream
Tssr104298	transcription start site region 104298	1905 bp downstream
Tssr104299	transcription start site region 104299	1871 bp downstream
Tssr104300	transcription start site region 104300	1851 bp downstream
Tssr104301	transcription start site region 104301	1731 bp downstream
Tssr104302	transcription start site region 104302	1717 bp downstream
Tssr104303	transcription start site region 104303	1698 bp downstream
Tssr104304	transcription start site region 104304	1656 bp downstream
Tssr104305	transcription start site region 104305	1634 bp downstream
Tssr104306	transcription start site region 104306	1619 bp downstream
Tssr104307	transcription start site region 104307	1602 bp downstream
Tssr104308	transcription start site region 104308	1529 bp downstream
Tssr104309	transcription start site region 104309	1505 bp downstream
Tssr104310	transcription start site region 104310	1419 bp downstream
Tssr104311	transcription start site region 104311	1370 bp downstream
Tssr104312	transcription start site region 104312	1301 bp downstream
Tssr104313	transcription start site region 104313	1285 bp downstream
Tssr104314	transcription start site region 104314	880 bp downstream
Tssr104315	transcription start site region 104315	1406 bp upstream