rs29445345 SNP Detail

Summary

• ID
  rs29445345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115518524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC TGCAGCTTTT CTACCTCAGA
  Y
  TCCACTGTCG GGTGGACAGG TGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss38810817	mCV24681662	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss132877516	ENSMUSSNP2412639	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323863456	CHEV_11_115489012	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29445345					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115518524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4144	CpG island 4144	15 bp proximal
Gm74427	predicted gene, 74427	717 bp upstream
Rr246115	regulatory region 246115	within coordinates
Rr369445	regulatory region 369445	within coordinates
Slc25a19	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	within coordinates
Tssr105892	transcription start site region 105892	706 bp upstream
Tssr111780	transcription start site region 111780	4 bp downstream
Tssr111781	transcription start site region 111781	29 bp downstream
Tssr111782	transcription start site region 111782	45 bp downstream
Tssr111783	transcription start site region 111783	63 bp downstream
Tssr111784	transcription start site region 111784	395 bp downstream
Tssr111785	transcription start site region 111785	427 bp downstream
Tssr111786	transcription start site region 111786	535 bp downstream
Tssr111787	transcription start site region 111787	562 bp downstream